Search results for "bio::graphics"
Graphics - represents a character block (Data or Characters) of a NEXUS file
This is a class representing a character block or data block in NEXUS file...
ARLIN/Bio-NEXUS-0.78 - 10 Feb 2012 13:31:13 UTC - Search in distribution
Bio::Graphics - Generate GD images of Bio::Seq objects
Please see Bio::Graphics::Panel for the full interface. Also try the script glyph_help.pl for quick help on glyphs and their options....
CJFIELDS/Bio-Graphics-2.40 - 16 Dec 2016 04:50:36 UTC - Search in distribution- Bio::Graphics::Util - non-object-oriented utilities used in Bio::Graphics modules
- Bio::Graphics::Panel - Generate GD images of Bio::Seq objects
- Bio::Graphics::Glyph - Base class for Bio::Graphics::Glyph objects
- 109 more results from Bio-Graphics »
Bio::Align::Graphics - Graphic Rendering of Bio::Align::AlignI Objects
Bio::Align::Graphics is a module designed to create image files out of Bio::Align::AlignI objects. An alignment may be manipulated with various formatting and highlighting options. An example: #!/usr/bin/perl -w use Bio::AlignIO; use Bio::Align::Grap...
CJFIELDS/Bio-Align-Graphics-1.7.3 - 25 Sep 2018 00:17:21 UTC - Search in distribution
Bio::DOOP::Graphics::Feature - Graphical representation of the features
This object represents a picture that contains all the sequences and sequence features of a subset. The module is fast enough to use it in your CGI scripts. You can also use it to visualize the subset....
RAZZOR/Bio-DOOP-DOOP-1.04 - 17 Aug 2009 12:59:38 UTC - Search in distribution- Bio::DOOP::DOOP - DOOP API main module
Bio::Graphics::Browser2::Util - Exported utilities
This package provides functions that support the Generic Genome Browser. It is not currently designed for external use. FUNCTIONS...
LDS/GBrowse-2.56 - 15 Jan 2017 21:29:11 UTC - Search in distribution- Bio::Graphics::Browser::CAlign - Compiled helper for Bio::Graphics::Browser::Realign
- Bio::Graphics::Browser::Plugin - Base class for gbrowse plugins.
- Bio::Graphics::Browser2::Markup - Markup routines for sequences in text form
- 79 more results from GBrowse »
Bio::Gonzales::Graphics::BLAST - make your blast result nice
JWB/Bio-Gonzales-0.083
-
02 Jan 2021 23:10:48 UTC
-
Search in distribution
- lib/Bio/Gonzales/Graphics/Glyph/colorfulBox.pm
- Bio::Gonzales::Util::Graphics::Color::Generator - generate distinguishable colors in RGB format
Bio::Graphics::Glyph::decorated_gene - A GFF3-compatible gene glyph with protein decorations
This glyph has the same functionality as Bio::Graphics::Glyph::gene, but uses Bio::Graphics::Glyph::decorated_transcript instead of the Bio::Graphics::Glyph::processed_transcript to render transcripts, which allows sequence features to be highlighted...
CHRISFR/Bio-Graphics-Glyph-decorated_gene-0.03 - 29 Jun 2012 21:12:12 UTC - Search in distribution- Bio::Graphics::Glyph::decorated_transcript - draws processed transcript with protein decorations
Bio::Graphics::Browser2::Plugin::BS_PCRTagger
NOTDOCTOR/Bio-BioStudio-2.11
-
04 Dec 2015 18:59:24 UTC
-
Search in distribution
GD::SVG - Seamlessly enable SVG output from scripts written using GD
GD::SVG painlessly enables scripts that utilize GD to export scalable vector graphics (SVG). It accomplishes this task by wrapping SVG.pm with GD-styled method calls. To enable this functionality, one need only change the "use GD" call to "use GD::SV...
TWH/GD-SVG-0.33 - 10 May 2009 14:39:31 UTC - Search in distributionMCE::Shared - MCE extension for sharing data supporting threads and processes
This module provides data sharing capabilities for MCE supporting threads and processes. MCE::Hobo provides threads-like parallelization for running code asynchronously....
MARIOROY/MCE-Shared-1.886 - 13 Sep 2023 23:57:14 UTC - Search in distribution
BioPerl - Perl modules for biology
BioPerl is the product of a community effort to produce Perl code which is useful in biology. Examples include Sequence objects, Alignment objects and database searching objects. These objects not only do what they are advertised to do in the documen...
CJFIELDS/BioPerl-1.7.8 - 03 Feb 2021 05:15:14 UTC - Search in distribution- Bio::Das::SegmentI - DAS-style access to a feature database
- Bio::SeqFeature::Lite - Lightweight Bio::SeqFeatureI class
get_datasets.pl - A program to collect data for a list of features
This program will collect dataset values from a variety of sources, including features in a BioPerl Bio::DB::SeqFeature::Store database, binary wig files .wib loaded in a database using Bio::Graphics::Wiggle, bigWig files, bigBed files, Bam alignment...
TJPARNELL/Bio-ToolBox-1.691 - 13 Oct 2022 18:07:52 UTC - Search in distribution- Bio::ToolBox::db_helper - helper interface to various database formats
- Bio::ToolBox::SeqFeature - Fast, simple SeqFeature implementation
- Bio::ToolBox::db_helper::wiggle
Devel::Monitor - Monitor your variables/objects for memory leaks
You have memory leaks, and you want to remove it... You can use this tool to help you find which variables/objects that are not destroyed when they should be, and thereafter, you can visualise exactly where is the circular reference for some specific...
PHCOTE/Devel-Monitor-0.9.0.7 - 21 Apr 2005 01:12:30 UTC - Search in distribution
Bio::DB::GFF - Storage and retrieval of sequence annotation data
Bio::DB::GFF provides fast indexed access to a sequence annotation database. It supports multiple database types (ACeDB, relational), and multiple schemas through a system of adaptors and aggregators. The following operations are supported by this mo...
CJFIELDS/Bio-DB-GFF-1.7.4 - 08 Jan 2020 20:41:58 UTC - Search in distribution- Bio::DB::GFF::Aggregator::orf - An aggregator for orf regions
PrimerMap - generates a primer sequence graphical map
This object extends the Bio::SeqFeature::Generic class to provide an object for Bio::Graphics. Uses primer starting and ending coordinates (base pairs) to generate a primer map relative to a base sequence....
HALLORAN/PrimerMap-1.3 - 06 Dec 2016 15:41:59 UTC - Search in distribution
FAST::Bio::UnivAln - Bioperl alignment object
This module is the FAST::Bio::UnivAln alignment object which is part of the Bioperl project. Currently it has some nice methods for accessing an alignment after reading it in from certain formats, incl. utilities like consensus and reverse complement...
DHARD/FAST-1.06 - 21 Apr 2015 08:04:25 UTC - Search in distribution
Book::Chinese::MasterPerlToday::BeACPANAuthor - Be a CPAN Author
本章主要描述如何成为一个 CPAN 贡献者 您有一个非常好的模块，您想与整个 Perl 社区分享。最好的方式是将您的模块上传到 CPAN，本章将描述如何打包，上传您的模块和一些 CPAN 社区约定俗成的惯例。 PAUSE 上传模块到 CPAN 之前，您首先需要到 PAUSE <http://pause.perl.org/> 申请一个帐号。通常帐号会在一周之内被批准（因为是志愿者自愿维护和批准整个 PAUSE 网站，所以有点慢）。 上传模块将在您通过帐号批准之后，登录 PAUSE 网站，然后点击左...
FAYLAND/Book-Chinese-MasterPerlToday-0.02 - 31 Aug 2009 05:35:44 UTC - Search in distribution
Bio::DB::USeq - Read USeq archive database files
Bio::DB::USeq is a BioPerl style adaptor for reading USeq files. USeq files are compressed, indexed data files supporting modern bioinformatic datasets, including genomic points, scores, and intervals. More information about the USeq software package...
TJPARNELL/Bio-DB-USeq-0.26 - 24 Sep 2022 02:31:45 UTC - Search in distribution
Bio::DB::Das::Chado - DAS-style access to a chado database
Bio::DB::Das::Chado allows DAS style access to a Chado database, getting SeqFeatureI-compliant BioPerl objects and allowing GBrowse to access a Chado database directly....
SCAIN/Bio-DB-Das-Chado-0.35a - 07 Apr 2015 23:02:17 UTC - Search in distribution